Source: unicycler
Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
 Andreas Tille <tille@debian.org>,
 Liubov Chuprikova <chuprikovalv@gmail.com>,
Section: science
Build-Depends:
 debhelper-compat (= 13),
 dh-sequence-python3,
 python3-all,
 python3-setuptools,
 default-jdk <!nocheck>,
 bcftools,
 bowtie2 <!nocheck>,
 miniasm,
 ncbi-blast+ <!nocheck>,
 pilon <!nocheck>,
 racon,
 samtools <!nocheck>,
 spades,
 libseqan2-dev,
 zlib1g-dev,
Vcs-Browser: https://salsa.debian.org/med-team/unicycler
Vcs-Git: https://salsa.debian.org/med-team/unicycler.git
Homepage: https://github.com/rrwick/Unicycler
Rules-Requires-Root: no

Package: unicycler
Architecture: any
Depends:
 ${python3:Depends},
 ${shlibs:Depends},
 ${misc:Depends},
 default-jre,
 bcftools,
 bowtie2,
 miniasm,
 ncbi-blast+,
 pilon,
 racon,
 samtools,
 spades,
Recommends:
 unicycler-data,
Description: hybrid assembly pipeline for bacterial genomes
 Unicycler is an assembly pipeline for bacterial genomes. It can assemble
 Illumina-only read sets where it functions as a SPAdes-optimiser. It can
 also assembly long-read-only sets (PacBio or Nanopore) where it runs a
 miniasm+Racon pipeline. For the best possible assemblies, give it both
 Illumina reads and long reads, and it will conduct a hybrid assembly.

Package: unicycler-data
Architecture: all
Multi-Arch: foreign
Depends:
 ${misc:Depends},
Description: hybrid assembly pipeline for bacterial genomes (data package)
 Unicycler is an assembly pipeline for bacterial genomes. It can assemble
 Illumina-only read sets where it functions as a SPAdes-optimiser. It can
 also assembly long-read-only sets (PacBio or Nanopore) where it runs a
 miniasm+Racon pipeline. For the best possible assemblies, give it both
 Illumina reads and long reads, and it will conduct a hybrid assembly.
 .
 This package contains architecture independent data for unicycler.
